DenseSparseMatrix is now column-major.

1. Introduce new typdefs in eigen.h to allow for column
   major matrices.

2. Clean up old unused typedefs, and the aligned typedefs
   since they do not actually add any real performance.

3. Made eigen.h conform to the google style guide by removing
   the using directives. They were polluting the ceres namespace.

4. Made the template specialization generator work again.

Change-Id: Ic2268c784534b737ebd6e1a043e2a327adaeca37
diff --git a/internal/ceres/dense_sparse_matrix.h b/internal/ceres/dense_sparse_matrix.h
index 1e4d499..6c7b60a 100644
--- a/internal/ceres/dense_sparse_matrix.h
+++ b/internal/ceres/dense_sparse_matrix.h
@@ -51,7 +51,7 @@
   // Build a matrix with the same content as the TripletSparseMatrix
   // m. This assumes that m does not have any repeated entries.
   explicit DenseSparseMatrix(const TripletSparseMatrix& m);
-  explicit DenseSparseMatrix(const Matrix& m);
+  explicit DenseSparseMatrix(const ColMajorMatrix& m);
 #ifndef CERES_NO_PROTOCOL_BUFFERS
   explicit DenseSparseMatrix(const SparseMatrixProto& proto);
 #endif
@@ -78,8 +78,8 @@
   virtual const double* values() const { return m_.data(); }
   virtual double* mutable_values() { return m_.data(); }
 
-  ConstAlignedMatrixRef matrix() const;
-  AlignedMatrixRef mutable_matrix();
+  ConstColMajorMatrixRef matrix() const;
+  ColMajorMatrixRef mutable_matrix();
 
   // Only one diagonal can be appended at a time. The diagonal is appended to
   // as a new set of rows, e.g.
@@ -106,7 +106,7 @@
   void RemoveDiagonal();
 
  private:
-  Matrix m_;
+  ColMajorMatrix m_;
   bool has_diagonal_appended_;
   bool has_diagonal_reserved_;
 };