Fix alignment issues with Jets.

1. Test that reproduces the failure on macos.
2. Move the alignment macros from manual_constructor.h
   to macros.h and rename them to prevent conflicts.
3. The inline array used by FixedArray is now aligned.
4. Jet has been modified to be eigen friendly.

Change-Id: I4563847a767a92156dabab1ab420f0cdddb8ba77

include/ceres/internal/manual_constructor.h

diff --git a/include/ceres/internal/manual_constructor.h b/include/ceres/internal/manual_constructor.h
index a1d1f44..174d35e 100644
--- a/include/ceres/internal/manual_constructor.h
+++ b/include/ceres/internal/manual_constructor.h
@@ -45,60 +45,49 @@
 namespace ceres {
 namespace internal {
 
-// ------- Define ALIGNED_CHAR_ARRAY --------------------------------
+// ------- Define CERES_ALIGNED_CHAR_ARRAY --------------------------------
 
-#ifndef ALIGNED_CHAR_ARRAY
+#ifndef CERES_ALIGNED_CHAR_ARRAY
 
 // Because MSVC and older GCCs require that the argument to their alignment
 // construct to be a literal constant integer, we use a template instantiated
 // at all the possible powers of two.
 template<int alignment, int size> struct AlignType { };
 template<int size> struct AlignType<0, size> { typedef char result[size]; };
-#if defined(_MSC_VER)
-#define BASE_PORT_H_ALIGN_ATTRIBUTE(X) __declspec(align(X))
-#define BASE_PORT_H_ALIGN_OF(T) __alignof(T)
-#elif defined(__GNUC__)
-#define BASE_PORT_H_ALIGN_ATTRIBUTE(X) __attribute__((aligned(X)))
-#define BASE_PORT_H_ALIGN_OF(T) __alignof__(T)
-#endif
 
-#if defined(BASE_PORT_H_ALIGN_ATTRIBUTE)
+#if !defined(CERES_ALIGN_ATTRIBUTE)
+#define CERES_ALIGNED_CHAR_ARRAY you_must_define_CERES_ALIGNED_CHAR_ARRAY_for_your_compiler
+#else  // !defined(CERES_ALIGN_ATTRIBUTE)
 
-#define BASE_PORT_H_ALIGNTYPE_TEMPLATE(X) \
+#define CERES_ALIGN_TYPE_TEMPLATE(X) \
   template<int size> struct AlignType<X, size> { \
-    typedef BASE_PORT_H_ALIGN_ATTRIBUTE(X) char result[size]; \
+    typedef CERES_ALIGN_ATTRIBUTE(X) char result[size]; \
   }
 
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(1);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(2);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(4);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(8);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(16);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(32);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(64);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(128);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(256);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(512);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(1024);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(2048);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(4096);
-BASE_PORT_H_ALIGNTYPE_TEMPLATE(8192);
+CERES_ALIGN_TYPE_TEMPLATE(1);
+CERES_ALIGN_TYPE_TEMPLATE(2);
+CERES_ALIGN_TYPE_TEMPLATE(4);
+CERES_ALIGN_TYPE_TEMPLATE(8);
+CERES_ALIGN_TYPE_TEMPLATE(16);
+CERES_ALIGN_TYPE_TEMPLATE(32);
+CERES_ALIGN_TYPE_TEMPLATE(64);
+CERES_ALIGN_TYPE_TEMPLATE(128);
+CERES_ALIGN_TYPE_TEMPLATE(256);
+CERES_ALIGN_TYPE_TEMPLATE(512);
+CERES_ALIGN_TYPE_TEMPLATE(1024);
+CERES_ALIGN_TYPE_TEMPLATE(2048);
+CERES_ALIGN_TYPE_TEMPLATE(4096);
+CERES_ALIGN_TYPE_TEMPLATE(8192);
 // Any larger and MSVC++ will complain.
 
-#define ALIGNED_CHAR_ARRAY(T, Size) \
-  typename AlignType<BASE_PORT_H_ALIGN_OF(T), sizeof(T) * Size>::result
+#undef CERES_ALIGN_TYPE_TEMPLATE
 
-#undef BASE_PORT_H_ALIGNTYPE_TEMPLATE
-#undef BASE_PORT_H_ALIGN_ATTRIBUTE
+#define CERES_ALIGNED_CHAR_ARRAY(T, Size) \
+  typename AlignType<CERES_ALIGN_OF(T), sizeof(T) * Size>::result
 
-#else  // defined(BASE_PORT_H_ALIGN_ATTRIBUTE)
-#define ALIGNED_CHAR_ARRAY you_must_define_ALIGNED_CHAR_ARRAY_for_your_compiler
-#endif // defined(BASE_PORT_H_ALIGN_ATTRIBUTE)
+#endif  // !defined(CERES_ALIGN_ATTRIBUTE)
 
-#undef BASE_PORT_H_ALIGNTYPE_TEMPLATE
-#undef BASE_PORT_H_ALIGN_ATTRIBUTE
-
-#endif  // ALIGNED_CHAR_ARRAY
+#endif  // CERES_ALIGNED_CHAR_ARRAY
 
 template <typename Type>
 class ManualConstructor {
@@ -203,10 +192,10 @@
   }
 
  private:
-  ALIGNED_CHAR_ARRAY(Type, 1) space_;
+  CERES_ALIGNED_CHAR_ARRAY(Type, 1) space_;
 };
 
-#undef ALIGNED_CHAR_ARRAY
+#undef CERES_ALIGNED_CHAR_ARRAY
 
 }  // namespace internal
 }  // namespace ceres